{ "ok": true, "resource": { "id": "RES_0D1A1247B87D", "resource_type": "skill", "canonical_url": "https://github.com/K-Dense-AI/scientific-agent-skills/tree/1e5eeffbdad3749125afe7ab48a39694e27f181c/skills/ontology-term-resolution", "name": "ontology-term-resolution", "summary_en": "Resolve free-text scientific labels to ontology term IDs and validate existing CURIEs against the EBI Ontology Lookup Service (OLS4). Use whenever an ontology identifier must be produced or checked - annotating tissue, cell type, disease, phenotype, assay, chemical, organism, sex, or developmental stage fields; preparing metadata for GEO, ENA, BioSamples, CELLxGENE, HCA, or ISA-Tab submission; auditing a metadata table of term IDs; checking whether a term is obsolete and what replaced it; or mapping between ontologies. Triggers include \"ontology term\", \"ontology ID\", \"CURIE\", \"controlled vocabulary\", \"UBERON\", \"CL:\", \"MONDO\", \"HPO\", \"EFO\", \"ChEBI\", \"NCBITaxon\", \"GO term\", \"PATO\", \"annotate this tissue/cell type/disease\", and any request to emit or verify an identifier shaped like PREFIX:0001234.", "summary_zh": "将自由文本的科学标签解析为本体术语ID，并针对EBI本体查找服务（OLS4）验证现有的CURIE。每当需要生成或检查本体标识符时使用——注释组织、细胞类型、疾病、表型、检测、化学物质、生物体、性别或发育阶段字段；准备GEO、ENA、BioSamples、CELLxGENE、HCA或ISA-Tab提交的元数据；审计术语ID的元数据表；检查术语是否过时以及被什么替代；或在本体之间进行映射。触发词包括“ontology term”、“ontology ID”、“CURIE”、“controlled vocabulary”、“UBERON”、“CL:”、“MONDO”、“HPO”、“EFO”、“ChEBI”、“NCBITaxon”、“GO term”、“PATO”、“annotate this tissue/cell type/disease”，以及任何请求发出或验证形如PREFIX:0001234的标识符。", "description_en": "This Agent Skill resolves free-text scientific labels to ontology term IDs and validates existing CURIEs against the EBI Ontology Lookup Service (OLS4). It is intended for use whenever an ontology identifier must be produced or checked, including annotating tissue, cell type, disease, phenotype, assay, chemical, organism, sex, or developmental stage fields; preparing metadata for GEO, ENA, BioSamples, CELLxGENE, HCA, or ISA-Tab submission; auditing a metadata table of term IDs; checking whether a term is obsolete and what replaced it; or mapping between ontologies. The skill provides two scripts: resolve_terms.py (text to ID) and validate_terms.py (ID to verdict). It requires Python 3.11+ and network access to https://www.ebi.ac.uk/ols4 (public, no API key). 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