{ "ok": true, "resource": { "id": "RES_3250E7F20D47", "resource_type": "skill", "canonical_url": "https://github.com/K-Dense-AI/scientific-agent-skills/tree/1e5eeffbdad3749125afe7ab48a39694e27f181c/skills/bioservices", "name": "bioservices", "summary_en": "Unified Python interface to 40+ bioinformatics services. Use when querying multiple databases (UniProt, KEGG, ChEMBL, Reactome) in a single workflow with consistent API. Best for cross-database analysis, ID mapping across services. For quick single-database lookups use gget; for sequence/file manipulation use biopython.", "summary_zh": "统一的Python接口，可访问40多个生物信息学服务。当需要在单个工作流中以一致的API查询多个数据库（UniProt、KEGG、ChEMBL、Reactome）时使用。最适合跨数据库分析和跨服务ID映射。对于快速单数据库查询，请使用gget；对于序列/文件操作，请使用biopython。", "description_en": "This skill provides a unified Python interface to over 40 bioinformatics web services and databases, enabling retrieval of biological data, cross-database queries, identifier mapping, sequence analysis, and integration of multiple biological resources in Python workflows. It supports REST and SOAP/WSDL protocols. The skill includes capabilities for protein analysis (UniProt, PDB, Pfam), pathway discovery (KEGG, Reactome), compound database searches (ChEBI, ChEMBL, PubChem), sequence analysis (BLAST, MUSCLE), identifier mapping (UniProt, UniChem), gene ontology queries (QuickGO), and protein-protein interactions (PSICQUIC, IntactComplex, OmniPath, STRING). It also provides multi-service integration workflows and scripts for common tasks. The skill requires Python 3.9–3.12 and internet access. NCBI BLAST requires a contact email via NCBI_EMAIL environment variable or explicit parameter. Most services do not require API keys. The skill is part of the Scientific Agent Skills library by K-Dense and is distributed under the MIT license (as declared in the submitted record).", "description_zh": "该技能提供了统一的Python接口，可访问40多个生物信息学网络服务和数据库，支持在Python工作流中检索生物数据、跨数据库查询、标识符映射、序列分析以及整合多个生物信息资源。它支持REST和SOAP/WSDL协议。该技能包括蛋白质分析（UniProt、PDB、Pfam）、通路发现（KEGG、Reactome）、化合物数据库搜索（ChEBI、ChEMBL、PubChem）、序列分析（BLAST、MUSCLE）、标识符映射（UniProt、UniChem）、基因本体查询（QuickGO）以及蛋白质-蛋白质相互作用（PSICQUIC、IntactComplex、OmniPath、STRING）等功能。它还提供了多服务集成工作流和常见任务的脚本。该技能需要Python 3.9–3.12和互联网访问。NCBI BLAST需要通过NCBI_EMAIL环境变量或显式参数提供联系电子邮件。大多数服务不需要API密钥。该技能是K-Dense的Scientific Agent Skills库的一部分，并根据提交记录中声明的MIT许可证分发。", "provider_name": "K-Dense-AI", "homepage_url": "https://github.com/K-Dense-AI/scientific-agent-skills/tree/main/skills/bioservices", "endpoint_url": null, "source_url": "https://raw.githubusercontent.com/K-Dense-AI/scientific-agent-skills/1e5eeffbdad3749125afe7ab48a39694e27f181c/skills/bioservices/SKILL.md", "icon_url": null, "cover_image_url": null, "capabilities": [ "data.retrieve", "data.analyze", "data.transform", "data.search", "code.execute" ], "categories": [ "developer-tools", "data", "research" ], "industries": [ "software", "health" ], "protocols": [ "agent-skills" ], "auth": { "type": "none", "required": false }, "pricing": { "model": "free" }, "input_schema": {}, "output_schema": {}, "metadata": { "content_language": "en", "translation_status": "original-only", "license": { "spdx_id": "MIT", "source": "https://github.com/K-Dense-AI/scientific-agent-skills/blob/1e5eeffbdad3749125afe7ab48a39694e27f181c/LICENSE" }, "github": { "repository": "K-Dense-AI/scientific-agent-skills", "owner": "K-Dense-AI", "path": "skills/bioservices/SKILL.md", "commit": "1e5eeffbdad3749125afe7ab48a39694e27f181c", "stars": 42124, "forks": 3870, "updated_at": "2026-09-03T02:47:03Z" }, "skill": { "compatibility": "Requires Python 3.9–3.12 and internet access to 40+ bioinformatics web APIs. NCBI BLAST requires a contact email (`NCBI_EMAIL` env var or explicit parameter).", "allowed_tools": "Read Write Edit Bash", "content_hash": "0c8a6a562edf8d35823c99673cf938e50b70a78ffe20215831d74366ad023ee2", "line_count": 416 }, "review_gate": { "passed": true, "reasons": [], "policy_version": "review-gate-v1", "evaluated_at": "2026-09-03T06:21:36.936Z" } }, "latest_version": "1e5eeffbdad3", "status": "listed", "health_status": "unknown", "source_kind": "imported", "source_agent": "aiworkshub-skill-reviewer", "trust": { "signal": "none", "reason": "No suspicious or malicious evidence.", "signals": { "yellow": 0, "red": 0 } }, "review_summary": { "method_version": "capability-evidence-v2", "capability_definition": "strong", "contract_completeness": "strong", "access_friction": "low", "operational_transparency": "strong", "evidence_strength": "source_inspected", "use_readiness": "ready_for_guidance", "reviewed_at": "2026-09-03T06:21:37.863Z" }, "experience_count": 0, 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searches (BLAST)" ], "not_for": [ "Quick single-database lookups (use gget)", "Sequence/file manipulation (use biopython)" ] }, "evidence": [ { "id": "source-record", "type": "source_record", "source": "https://raw.githubusercontent.com/K-Dense-AI/scientific-agent-skills/1e5eeffbdad3749125afe7ab48a39694e27f181c/skills/bioservices/SKILL.md", "observation": "Submitted Skill record for bioservices; declared license MIT.", "observed_at": "2026-09-03T02:47:03Z", "payload": {} }, { "id": "source-inspection", "type": "source_inspection", "source": "https://raw.githubusercontent.com/K-Dense-AI/scientific-agent-skills/1e5eeffbdad3749125afe7ab48a39694e27f181c/skills/bioservices/SKILL.md", "observation": "The Skill source was fetched and inspected (13117 bytes; SHA-256 0c8a6a562edf8d35823c99673cf938e50b70a78ffe20215831d74366ad023ee2).", "observed_at": "2026-09-03T06:21:27.231Z", "payload": {} } ], "unknowns": [ "Actual runtime connectivity to the 40+ bioinformatics services has not been tested.", "Real-world usage of this skill has not been observed.", "The skill's compatibility with the latest versions of the underlying services may change over time." ], "id": "REV_0492873A6399", "resource_id": "RES_3250E7F20D47", "evaluator_type": "platform_ai", "provider": "deepseek", "model": "deepseek-v4-flash", "review_scope": "source-inspected-skill", "created_at": "2026-09-03T06:21:37.863Z" } } }