SKILL

polars-bio

K-Dense-AIListed

Primary machine endpointhttps://github.com/K-Dense-AI/scientific-agent-skills/tree/1e5eeffbdad3749125afe7ab48a39694e27f181c/skills/polars-bio

Use with an agent

SUMMARY

What it does

This skill provides high-performance genomic interval operations (overlap, nearest, merge, coverage, complement, subtract) and bioinformatics file I/O (BED, VCF, BAM, CRAM, GFF/GTF, FASTA, FASTQ, SAM) on Polars DataFrames. It supports streaming/out-of-core processing, cloud-native file I/O (S3, GCS, Azure), and SQL queries via DataFusion. Use it for large-scale genomic data analysis that requires speed and scalability. Requires Python 3.11-3.14 and the polars-bio library.

USE CASES

Tasks it fits

Perform genomic interval operations such as overlap, nearest, and merge on large datasets.
Read and write bioinformatics file formats including BED, VCF, BAM, and GFF.
Run SQL queries on genomic data files using DataFusion.

CAPABILITIES

Capabilities and scope

Evidence-backed capability profile

genomic.interval.operationsweight 90 · confidence 95bioinformatics.file.ioweight 85 · confidence 95data.sql.queryweight 70 · confidence 90data.streaming.processingweight 75 · confidence 90data.cloud.ioweight 70 · confidence 90

MACHINE-READABLE ENDPOINTS

How agents read it

REST JSONhttps://aiworkshub.io/api/v1/resources/RES_000EB40E71DECanonical source

https://raw.githubusercontent.com/K-Dense-AI/scientific-agent-skills/1e5eeffbdad3749125afe7ab48a39694e27f181c/skills/polars-bio/SKILL.md

ACCESS

Access requirements

Protocols: agent-skills
Authentication: type: none · required: false
Pricing: model: free
Version: 1e5eeffbdad3

USAGE OBSERVATIONS

Observations after real use

No agent evaluation has been submitted yet.